Список использованной литературы
Общий
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Глава 1
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Глава 2
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Глава 3
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Глава 4
: Martin, G. S., The hunting of the Src, 2001; 2:467.
Yeatman, T.J. and Roskoski, R. Jr., A renaissance for SRC, 2004; 4: 470.
: Donner, P., Greiser-Wilke, I. and Moelling, K., Nuclear localization and DNA binding of Myc, 1982; 296:262 and Moelling, K. 1984, 312:551, Myb, 1985; 40:983.
Axel, R., Schlom, J., and Spiegelman, S., Presence in human breast cancer of RNA homologous to MMTV1972; 235:32.
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Zimmermann, S., Moelling K., and Radziwil, G., MEK1 mediates positive feedback on Raf, 1997; 15:1503.
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Das Thakur, M., Modelling Vemurafenib resistance in melanoma, 2013; 494:251.
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: Baumgartner, M. Moelling, K., SRC-migration and invasion by PDZ, 008; 28:642.
Broecker, F. Moelling, K., Transcription of C-terminal metastatic c-Src mutant, 2016; 283:1669.
: Vogelstein, B. Cancer genome landscape, 2013; 339:1546
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zur Hausen, H., Papillomaviruses and cancer: From basics to clinical application, 2002; 2:342.
: Han, Y.C. Ventura, A., miR-17–92-mutant mice, . 2015; 47:766–75.
: Kearney, M. Coffin, J.M., Multiple sources of contamination in XMRV infection, 012; 7: e30889.
Salama, N. Life in the human stomach: Helicobacter pylori, . 2013; 11:385.
Глава 5
: Suttle, C.A., Viruses in the sea, 2005; 437:356.
Reardon, S., News: Phage therapy: Phage therapy gets revitalized, 2014; 510:15.
Young, R.Y. and Gill, J.J., Phage therapy redux – What is to be done?, 2015; 350:1163.
Delwart, E., A roadmap to the human virome, . 2013; 9: e1003146.
Zarowiecki, M., Metagenomics with guts, . 2012; 10:674.
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Qin, J. A human gut microbial gene catalogue by metagenomic sequencing, 2010; 464:59.
Katsnelson, A. Twin study surveys genome for cause of multiple sclerosis, 2010; 464: 1259.
Mokili, J.L., Rohwer, F. and Dutilh, B.E., Metagenomics and future virus discovery, . 2012; 2:63.
: Dominguez-Bello, Microbiota of cesarean-born infants, 2016; doi:10.1038/nm.4039.
: Weiss, R.A. and Stoye, J.P., Virology. Our viral inheritance, 2013; 340:820.
Feschotte, C. and Gilbert, C., Endogenous viruses: Viral evolution and host biology, 2012; 13:283.
: Roossinck, M.J., The good viruses: Viral mutualistic symbioses. . 2011; 9:99.
Roossinck, M.J., Lifestyles of plant viruses, 2010; 365:1899.
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: Bezier, A. Polydnaviruses of braconid wasps derive from an ancestral nudivirus, 2009; 323: 926.
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: Mahal, S.P. Transfer of a prion strain leads to emergence of strain variants, 010; 107:22653.
Глава 6
: Van Etten, J., Giant viruses; 2011.
Van Etten, J., Lane, L.C. and Dunigan, D., DNA viruses: The really big ones (Giruses), 2010;64:83.
Broecker, F. Viral composition in the intestine after FT, 2016; 2: a000448.
Moelling, K. (Ed.), Nutrition and microbiome, (2016).
: Boyer, M. Mimivirus genome reduction after intraamoebal culture, 011; 108:10296.
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La Scola, B. Raoult, D., A giant virus in amoebae, 2003; 299:2033.
: Legendre, M. Mollivirus sib. 30,000y giant virus in Acanthamoea, 015; 112:10795
: Campos, R. K., Sambavirus: Mimivirus from rain forest, The Brazilian Amazon, 2014; 11:95.
: Pennisi, E., Ever bigger viruses shake tree of life, 2013; 341:226.
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Forterre, P., The origin of viruses and their possible roles in major evolutionary transitions, . 2006; 117:5.
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: Yutin, N. and Koonin, E.V., Proteorhodopsin genes in giant viruses, 2012; 7:34
: Stetter, K.O., A brief history of the discovery of hyperthermophilic life, . 2013; 41:416.
Podar, M. A genomic analysis of the archaeal system –, 2008; 9: R158.
Mochizuki, T. Archaeal virus with exceptional architecture, largest ssDNA genome, 012; 109:13386.
Prangishvili, D., Forterre, P. and Garrett, R.A., Viruses of the archaea: A unifying view, 2006; 4:837.
Глава 7
: Weiss, R.A., The discovery of endogenous retroviruses, 2006; 3:67.
: Katzourakis, A. Discovery of first endogenous lentivirus, 007; 10:6261.
Katzourakis, A. and Gifford, R.J., Endogenous viral elements in animal genomes, 2010: 6: e1001191.
Dewannieux, M. Identification of an infectious progenitor for the HERV-K, 2006; 16:1548.
: Tarlinton, R.E., Meers, J., and Young, P.R., Retroviral invasion of the koala genome, 2006; 442:79
: Belyi, V.A., Levine, A.J. and Skalka, A.M., Sequences from ancestral ssDNA viruses in vertebrate genomes: The parvoviridae and circoviridae are more than 40 to 50 mio years old, 2010; 84:12458
Gifford, R.J., A transitional endogenous lentivirus from a basal primate for lentivirus evolution, PNAS2008; 105:20362.
Katzourakis, A. Macroevolution of complex retroviruses, 2009; 32:1512.
: Lander, E.S. Initial sequencing and analysis of the human genome, 2001; 409:860.
Cordaux, R. and Batzer, M.A., The impact of retrotransposons on human genome evolution, 2009; 10:691.
SnapSot, Transposons, 2008; 135:192
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Pollard, K.S. RNA expressed during cortical development evolved in humans, 2006; 443:167.
Finnegan, D.J., Retrotransposons, . 2012; 22: R432–7.
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Sander, D.M. Intracisternal A-type retroviral particles in autoimmunity, . 2005; 68:222
Dolinoy, D.C. The Agouti mouse model: An epigenetic biosensor for nutritional and environmental alterations on the fetal epigenome, . 2008, 66 Suppl. 1: S7–11.
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: Luft, F.C. Sleeping Beauty jumps to new heights, 2010; 88:641.
: Amemiya, C.T. African coelacanth genome insights into tetrapod evolution, 2013; 496:311.
: Warren, W.C. Genome analysis of the platypus unique evolution, 2008; 453:175.
: Morris, K. and Mattick, J.S., The rise of regulatory RNA, . 2014; 15:423.
Chabannes, M. Three infectious viral species lying in wait in the banana genome, . 2013; 87:8624.
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Zimmerly, S. GroupII intron mobility, 1995; 82:545.
Beauregard, A., Curcio, M.J. and Belfort M., The take and give RT elements and hosts, . 2008; 42:587.
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Galej, W.P. Crystal structure of Prp8 reveals active site of slicosome, 2013; 493:638.
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Fukai, E. Derepression of the plant Chromovirus LORE1 induces germline transposition in regenerated plants, 2010; 6(3): e1000868.
Глава 8
: Eigen, M., Error catastrophe and antiviral strategy, 002; 99:13374.
Biebricher, C.K. and Eigen, M., What is a quasispecies, . 2006; 299:1.
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Koonin, E.V. and Dolja, V.V., A virocentric perspective on the evolution of life, 2013; 5:546.
Lambowitz, A.M. and Zimmerly, S., Mobile group II introns, 2004; 38:1.
Adamala, K., Engelhart, A.E., and Szostak, J.W., Generation of functional RNAs from inactive oligonucleotide complexes by non-enzymatic primer extension, . 2015; 137:483–489.
Forterre, P., Defining life: The virus viewpoint, 2010; 40:51.
Moelling, K., Are viruses our oldest ancestors? 2012; 13:1033.
Holmes, E.C., What does virus evolution tell us about virus origins? 2011; 85:5247.
: Lescot, M. and Ogata, H., Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages, 2015; 1–13.
: Memczak, S. Circular RNAs with regulatory potency, 2013; 495:333.
Hansen, T.B. Natural RNA circles function as efficient microRNA sponges, 2013; 495:384.
Hansen, T.B., Kjems, J., and Damgaard, C.K., Circular RNA and miR-7 in cancer, . 2013; 73:5609.
Ford, E. and Ares, M. Jr., Circular RNA using ribozymes from a T4 group I intron, 994; 12; 91:3117.
: Wilusz, J.E. and Sharp, P.A., A circuitous route to noncoding RNA. 2013; 340:44.
Navarro, B. Viroids: Infect a host and cause disease without encoding proteins, 2012; 94:1474.
Hammann, C. and Steger, G., Viroid-specific small RNA in plant disease, . 2012; 9:809.
Bartel, D.P., MicroRNAs target recognition and regulatory functions, 2009; 136:215.
Eilus, J.E. and Sharp, P.A., A circuitous route to non-coding RNA, 2013; 340:440.
: Moore, P.B., and Steitz, T.A., The ribosome revealed, 2005; 30:28.
Ma, B.G. Zhang, H.Y., Characters of very ancient proteins, 008; 366:607.
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: Dreher, T.W., Viral tRNAs and tRNA-like structures, 2010; 1:402.
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: Eickbush, D.G., Retrotransposon ribozyme and its self-cleavage site, 2013; 8(9): e66441.
Webb, C.H. Widespread occurrence of self-cleaving ribozymes, 2009; 326:953.
Hammann, C. The ubiquitous hammerhead ribozyme, 2012; 18:871.
: Braza, R. and Ganem, D., The HDAg may be of human origin, 1996; 274:90.
Taylor, J., and Pelchat, M., Origin of hepatitis delta virus, 2010; 5:393.
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: Liu, M. Bordetella bacteriophages encoding RT-mediated tropism-switching, 2004; 186:1503.
Doulatov, S. Tropism switching in Bordetella bacteriophage by diversity-generating retroelements, 2004; 431:476.
: Buck, K.W., Replication of tobacco mosaic virus RNA, 1999; 354:613
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Dreher, T.W., Viral tRNAs and tRNA-like structures, 2010; 1:402.
Hammond, J.A. 3D architectures of viral tRNA-like structures, 2009; 15:294.
Mitrovic, J. Sequences of Stolbur phytoplasma from DNA, 2014; 24:1.
Georgiades, K. Gene gain and loss events in and species, 2011; 6:6.
: Roossinck, M.J., Lifestyles of plant viruses, . 2010; 365:1899.
: Krupovic M. ., Geminiviruses: A tale of a plasmid becoming a virus, . 2009; 9:112.
: Lesnaw, J.A. and Ghabrial, S.A., Tulip breaking: Past, present and future, 2000; 84:1052.
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Глава 9
: McNab, F. O’Garra, A., Type Interferons in infectious disease, 2015; 15:87–103.
: Baulcombe, D.C. and Dean, C., Epigenetic regulation in plant to the environment, 2014; 6(9): a019471.
Wilson, R.C. and Doudna, J.A., Molecular mechanisms of RNA interference, 2013; 42:217.
Moelling K., Matskevich A., and Jung J. S., Relationship between retroviral replication and RNA interference, 006; 71:365–8.
Matskevich, A. and Moelling, K., Dicer is involved in protection against influenza A virus infection, 2007; 88:2627–35.
Song J. J., The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNA effector complexes, . 2003; 10:1026–32.
Nowotny, M., Retroviral integrase superfamily: The structural perspective. 2009; 19:144–151.
Nasir, A. and Caetano-Anolles, G., Origin of viruses and their impact on cellular evolution, 2015; 1341:61.
Moelling, K. and Broecker, F., The RT-RNase H: From viruses to antiviral defense, . Sc2015; 1341:126–35.
: Sterken, M.G. A heritable antiviral RNAi response limits Orsay virus infection, 2014; 9(2).
: Doudna, J.A. and Charpentier, E., Genome editing. The new frontier of genome engineering with CRISPR-Cas9, 2014; 346 (6213):1258096.
Jinek, M. Structures of Cas9 endonucleases, 2014; 343, 1247997.
Hsu, P.D., Lander, E.S., and Zhang, F., Development and applications of CRISPRCas9 for genome engineering, 2014; 157:1262.
Barrangou, R. and Marraffini, L.A., CRISPR-Cas systems: Procaryotes to adaptive immunity, 2014; 54:234.
Krupovic, M. Casposons: Self-synthesizing DNA transposons of CRISPR-Cas immunity, 2014; 12:36.
Horvath, P. and Barrangou R., CRISPR/Cas9, the immune system of bacteria and archaea, 2010; 327:167.
Swarts, D.C. DNA-guides DNA interference by a procaryotic Argonaute, 2014; 507:258.
Moelling, K. Silencing of HIV by hairpin-loop DNA oligonucleotide (siDNA), 2006; 580:3545.
Zhou, L. Transposition of hAT elements links TE and V(D)J recombination, 2004; 432:995
Bateman, A., Eddy, S.R., and Chothia, C., Members of the immunoglobulin superfamily in bacteria, .1996; 5:1939.
Beauregard, A., Curcio, M.J. and Belfort M., The take and give between TE, 2008; 42:587.
: Isselbacher, K.J., Retrospective: Paul C. Zamecnik (1912–2009), 2009; 326:1359.
Citron, M. and Schuster, H., The c4 repressors of bacteriophages P1 and P7 are antisense RNAs, 1990; 62:591.
Глава 10
Reardon, S., Phage therapy gets revitalized, 2014; 510:15.
Young, Ry. and Gill, J.J., Phage therapy redux – What is to be done? 2015; 350:1163.
Viertel, T.M., Ritter, K. and Horz, H.P., Phage therapy against MDR pathogens, . 2014; 69:2326–36.
: EU program: The main objective of Phagoburn is to assess the safety, effectiveness and pharmacodynamics of two therapeutic phage cocktails to treat either or burn wound infections, 2013–2016.
Vanessa, K. Gut microbiota from twins discordant for obesity, 2013; 341:1079.
: Nьbel, U., MRSA transmission on a neonatal intensive care unit, . 2013;8(1): e54898.
Stower, H., Medical genetics: Narrowing down obesity genes, 2014;20:349.
Lepage, P. Dore, A., Metagenomic insight into our gut`s microbiome, 2013; 62:146.
Smemo, S., Obesity-associated variants within FTO and with IRX3, 2014; 507:371.
Blaser, M. and Bork, P. The microbiome explored: Recent insights and future challenges, . 2013;11:213.
: Tobie, E.W. DNA methylation to prenatal famine, 2009; 18;2:4046.
Bygren, L.O. Grandmothers’ early food supply influenced mortality of female grandchildren, 2014; 15:12.
Norman, J.M. Alterations in the enteric virome in inflammatory bowel disease, 2015;160: 447.
Grossniklaus, U. Transgenerational epigenetic inheritance: How important is it?, 2013; 14:228.
Pembrey, M.E. Sex-specific, male-line transgenerational responses in humans, . 2006; 14:159.
Arabidopsis Genome Initiative, Analysis of the genome sequence of , 2006; 441:469.
Waterland, R.A. and Jirtle, R.L., TE targets for early nutritional effects on epigenetic gene regulation. 003; 23:5293.
Slotkin, R.K. and Martienssen, R., TE and the epigenetic regulation of the genome, 2007; 8:2.
Pfeifer, A. Verma, I.M., Lentiviral vectors: Lack of gene silencing in embryos, 002; 99:2140.
Lumey, L.H. The Dutch hunger winter families study, . 2007; 36:1196.
Roseboom, T., de Rooij, S. and Painter, R., The Dutch famine and consequences for adult health, 2006; 82:485.
Cao-Lei, L. DNA methylation triggered by prenatal stress exposure to ice storm, 2014; 9:9(e107653).
Ost, A. Paternal diet defines offspring chromatin state and intergenerational obesity, 2014; 159:1352.
: Vandenheuvel, D., Lavigen, R. and Brьssow, H., Bacteriophage therapy, . 2015; 2:599.
: Bercik, P. Intestinal microbiota affect BDNF, 2011; 141:599.
: Le Chatelier Richness of human gut microbiome and metabolic markers, 2013;500:541.
: Qin, J. ., Wang, J., A metagenome-wide study of gut microbiota in diabetes, 2012; 490:55.
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